Complete traceability matrix for AGISystem2 specifications following GAMP Category 5 guidelines. All requirements are traceable from user needs through design to implementation.
| Document | Type | Requirements | Status |
|---|---|---|---|
| URS.md | User Requirements Specification | URS-01 to URS-40 | Complete |
| FS.md | Functional Specification | FS-01 to FS-90 | Complete |
| NFS.md | Non-Functional Specification | NFS-01 to NFS-91 | Complete |
| DS00 - DS74 (+ DS07a-h) | Design Specifications | 85 documents | Mixed |
Implemented Partial Research
Badges show implementation maturity (Impl:) and specification maturity (Spec: extracted from each DS header).
Project vision, problem statement, and strategic goals
HDC mathematics, vector operations, proofs
Sys2DSL language specification
System architecture and API design
Knowledge organization and storage
Query execution and inference
Abduction, induction, counterfactuals
Core theory index and chapter structure
Core theory overview and operator families
Core primitives and low-level semantic atoms
Typing rules, constraints, and validation
Semantic building blocks used by Core Theory
Logical operators, inference rules, and semantics
Temporal and modal operators and reasoning patterns
Roles, properties, and inheritance patterns
Bootstrap verbs and foundational predicates
Reasoning operators and higher-level patterns
Implementation patterns for compliance
Low-level HDC implementation details
Up-to-date navigation map of the current codebase
Vector to natural language transformation
Testing utilities, assertions, fixtures
Tokenization, normalization, NL transformation
Reasoning benchmarks and correctness verification
SPHDC strategy implementation
Constraint satisfaction problem solving and APIs
Holographic-first reasoning priority configuration
similar/analogy and other meta-query operators
Byte-channel HDC strategy and shifted baseline
Unification rules and semantic variable binding
Automated bug discovery system for reasoning pipelines
Natural language to Sys2DSL translation design
Optimization plan for constructivist-level reasoning
Chunked bundling + elastic geometry extension for Metric-Affine
Baseline symbolic backend and term engine design
Exact bitset polynomials with appearance-index atom dictionary (lossless)
Session isolation, IoC boundaries, and session-local state contracts
High-level Session APIs for holographic query and batch Q/A over loaded theories
Trustworthy pattern: tool semantics, plan validation, monitored execution
Trustworthy pattern: story bible guardrails, world rules, editorial constraints, bias reports
Trustworthy pattern: policy/regulation encoding, continuous checks, proof traces
Trustworthy pattern: checkable theories, contradiction detection, cross-theory mapping
Integrated roadmap: compositional theories, evidence, causality, uncertainty, numeric models, revision, experiments
Compositional structures, query compilation, multi-view semantic indexing, generalization-aware retrieval
Evidence objects, contradiction reports, revision policies, and proof-grade traces
Mechanisms, interventions, counterfactuals, and causal graphs integrated with executable theories
Priors/likelihood, inference traces, and calibration expectations for uncertainty as semantics
Quantities with units, model execution, solver adapters, and parameter estimation traces
Experiments as information actions: plan to reduce uncertainty under constraints
Research primitive: forward closure (STAR) and reverse closure (UNSTAR) over strategy-provided step operators
Research proposal: integrate STAR/UNSTAR into HDC-first mode with budgets, caching, and strategy-aware step operators
Research proposal: minimal program IR (STEP/FILTER/MU) for universal reasoning across HDC strategies
Research proposal: budgeted closure engine, dedup policies, traces, and metrics
Research proposal: backend hooks and mapping rules for STEP/decoding/projection across strategies
Research directions: semiring weights, constraint-layer plugin (numeric/units), and symbolic execution over theory traces
Research proposal: unify uncertainty weights and math/units constraints as first-class URK state semantics across strategies
Proposed HDC strategy: 2D torus lattice of discrete phases (Z_Q), modular bind/unbind, discrete bundling, phase-distance similarity
Proposed HDC strategy: complex 2D phasor field with add-superposition, phase binding, correlation similarity, and explicit geometry growth policy
Local HTTP UI for session inspection, chat, and KB browsing
Storage semantics, evidence/provenance, and backend orchestration contract
Deterministic compilation to SMT-LIB2 (v0 fragment) as URC artifacts
Config taxonomy and pack loading direction to support URC evolution
URC backend roadmap: fragments, capability registry, and orchestration strategy
CDCL SAT backend spec (URC fragment: Bool)
SMT backend integration beyond compilation-only DS50
Constraint programming backend spec (propagation + search)
Automata + fixpoint backends for transition systems (URC fragment: TS)
IC3/PDR-style backend and tactics for safety properties
Counterexample-guided orchestration between abstractions and backends
Abstract interpretation as a backend/tactic (URC fragment: AI)
Proof assistant integration for verification-grade artifacts
Saturation-style automated theorem proving (URC fragment: FOL)
Rewrite and completion backend/tactics for equational reasoning
Polynomial reasoning backend for algebraic fragments
Quantifier elimination backend for real arithmetic fragments
Integer and mixed-integer optimization backend integration
Semidefinite programming and sum-of-squares backend integration
Decomposition-based tactics for scalable reasoning
Probabilistic inference backends (message passing)
Model counting backends for probabilistic and evidence-weighted tasks
Symbolic execution backend for program-like fragments
Syntax-guided synthesis backend integration
ML guidance for proof search, premise selection, and tactic proposals
Execution plan for URC adoption across packs, storage semantics, orchestration, and evals
Audit checklist for eval suites: realism, coherence, and URC alignment
Note: URC (DS49+) and solver backends are tracked separately and are not included in the “Core v1” completion bar.
| Category | IDs | Count | Description |
|---|---|---|---|
| Core Reasoning | URS-01 to URS-05 | 5 | Determinism, explainability, confidence |
| Knowledge Management | URS-06 to URS-10 | 5 | Theories, versioning, persistence |
| Language & Interface | URS-11 to URS-15 | 5 | DSL, queries, API |
| Explainability | URS-16 to URS-20 | 5 | Traces, explanations, proofs |
| Performance | URS-21 to URS-24 | 4 | Response time, capacity |
| Integration | URS-25 to URS-29 | 5 | LLM, tools, environments |
| Compliance | URS-30 to URS-33 | 4 | Audit, regulations |
| Security | URS-34 to URS-36 | 3 | Data protection, validation |
| Usability | URS-37 to URS-40 | 4 | Documentation, debugging |
| Category | IDs | Count |
|---|---|---|
| Core HDC Operations | FS-01 to FS-07 | 7 |
| DSL Parser | FS-08 to FS-16 | 9 |
| Theory Management | FS-17 to FS-24 | 8 |
| Session Management | FS-25 to FS-33 | 9 |
| Executor | FS-34 to FS-40 | 7 |
| Query Engine | FS-41 to FS-48 | 8 |
| Proof Engine | FS-49 to FS-56 | 8 |
| Decoding & Phrasing | FS-57 to FS-65 | 9 |
| Core Theory Content | FS-66 to FS-72 | 7 |
| Error Handling | FS-73 to FS-78 | 6 |
| Debug Utilities | FS-79 to FS-85 | 7 |
| Audit & Tracing | FS-86 to FS-90 | 5 |
| Category | IDs | Count |
|---|---|---|
| Performance | NFS-01 to NFS-18 | 18 |
| Reliability | NFS-19 to NFS-29 | 11 |
| Memory & Resources | NFS-30 to NFS-41 | 12 |
| Security | NFS-42 to NFS-50 | 9 |
| Maintainability | NFS-51 to NFS-60 | 10 |
| Usability | NFS-61 to NFS-68 | 8 |
| Compatibility | NFS-69 to NFS-76 | 8 |
| Operations | NFS-77 to NFS-87 | 11 |
| Compliance | NFS-88 to NFS-91 | 4 |